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Exploring the Diversity and Biopharmaceutical Potential
of Unculturable Bacteria from Lake Michigan Sediments
PROJECT ACCOUNT NUMBER:  R/HE-19-06
PRINCIPAL INVESTIGATOR:  Jimmy E. Orjala
INITIATION DATE:  March 1, 2006
COMPLETION DATE:  February 29, 2008
AFFILIATION:  University of Illinois at Chicago
Jimmy E. Orjala
University of Illinois at Chicago
322 PHARM MC 781
833 S Wood St
Chicago, IL 60612
Ph:  312-996-5583
orjala@uic.edu
Objectives
To isolate and grow previously unculturable aquatic microorganisms.
Previously uncultured aquatic microorganisms will be grown and isolated using diffusion chambers in a simulated natural environment. We will obtain 50-75 novel isolates from a number of prokaryotic classes and divisions, including those with no known cultivable representatives.

To evaluate extracts for anticancer and anti-tuberculosis activities. Extracts from all individual microorganisms will be obtained and evaluated in a series of anticancer and anti-tuberculosis assays.

To determine the presence (or absence) of known metabolites in active extracts. All active extracts will be fractionated and analyzed by LC MS to identify any known metabolites.

Methodology
To isolate and grow previously unculturable aquatic microorganisms. Microbial Isolated: we will collect sediments and water from various Lake Michigan habitats and use them to establish a simulated natural environment in aquaria. We will then use this environment to isolate “unculturable” microorganisms using diffusion chambers. Purified isolates will be identified by 16S rRNA sequencing. Identified isolates will be re-grown to obtain a sufficient amount of biomass for biological and chemical evaluation. We intend to evaluate a phenomenon called “domestication” to enable us to grow these microorganisms on standard Petri dishes.

To evaluate extracts for anticancer and anti-tuberculosis activities. Extraction: we will extract unculturable microorganisms with a dichloromethane/methanol 1:1 mixture. These extracts will be evaluated for biological potential in anticancer and anti-tuberculosis assays. We will use the following cell lines for cytotoxicity testing: Lu1 (lung), LNCaP (prostate), and MCF-7 (breast). We will also screen against TB (Mycobacterium tuberculosis) in collaboration with the Institute of Tuberculosis Research.

To evaluate active extracts for the presence of known active metabolites (dereplication). Active extracts will be analyzed by LC MS to identify any previously described metabolites in a process known as dereplication. The MS information will be used to search the commercial databases for matches to known metabolites. Active extracts with no known metabolites will be selected as candidates for further evaluations for which additional funding will be needed. We anticipate obtaining this funding from appropriate funding sources, such as NIH or NOAA.

Rationale
The proposed research will explore and take advantage of a vast, but untapped resource existing in Lake Michigan – previously unculturable microorganisms. The majority of microorganisms from all environments resist cultivation in the laboratory. We can now, however, access this microbial diversity by employing a recently developed method: diffusion chambers in simulated natural environments. The study of these organisms will enhance our understanding of the diversity aquatic microorganisms in Lake Michigan. We will also be able to investigate the chemical and biochemical potential of these previously uncultured aquatic microorganisms, which we believe will validate our long range hypothesis that by accessing these unculturable microorganisms we will be able to gain access to an enormous source of novel bioactive organic molecules.