Objectives
To isolate and grow previously unculturable aquatic
microorganisms. Previously uncultured aquatic microorganisms
will be grown and isolated using diffusion chambers in a
simulated natural environment. We will obtain 50-75 novel
isolates from a number of prokaryotic classes and divisions,
including those with no known cultivable representatives.
To evaluate extracts for anticancer and anti-tuberculosis
activities. Extracts from all individual microorganisms will
be obtained and evaluated in a series of anticancer and
anti-tuberculosis assays.
To determine the presence (or absence) of known
metabolites in active extracts. All active extracts will be
fractionated and analyzed by LC MS to identify any known
metabolites.
Methodology
To isolate and grow previously unculturable
aquatic microorganisms. Microbial Isolated: we will collect
sediments and water from various Lake Michigan habitats and use
them to establish a simulated natural environment in aquaria. We
will then use this environment to isolate “unculturable”
microorganisms using diffusion chambers. Purified isolates will
be identified by 16S rRNA sequencing. Identified isolates will
be re-grown to obtain a sufficient amount of biomass for
biological and chemical evaluation. We intend to evaluate a
phenomenon called “domestication” to enable us to grow these
microorganisms on standard Petri dishes.
To evaluate extracts for anticancer and anti-tuberculosis
activities. Extraction: we will extract unculturable
microorganisms with a dichloromethane/methanol 1:1 mixture.
These extracts will be evaluated for biological potential in
anticancer and anti-tuberculosis assays. We will use the
following cell lines for cytotoxicity testing: Lu1 (lung), LNCaP
(prostate), and MCF-7 (breast). We will also screen against TB (Mycobacterium
tuberculosis) in collaboration with the Institute of
Tuberculosis Research.
To evaluate active extracts for the presence of known
active metabolites (dereplication). Active extracts will be
analyzed by LC MS to identify any previously described
metabolites in a process known as dereplication. The MS
information will be used to search the commercial databases for
matches to known metabolites. Active extracts with no known
metabolites will be selected as candidates for further
evaluations for which additional funding will be needed. We
anticipate obtaining this funding from appropriate funding
sources, such as NIH or NOAA.
Rationale
The proposed research will explore and take advantage of a vast,
but untapped resource existing in Lake Michigan – previously
unculturable microorganisms. The majority of microorganisms from
all environments resist cultivation in the laboratory. We can
now, however, access this microbial diversity by employing a
recently developed method: diffusion chambers in simulated
natural environments. The study of these organisms will enhance
our understanding of the diversity aquatic microorganisms in
Lake Michigan. We will also be able to investigate the chemical
and biochemical potential of these previously uncultured aquatic
microorganisms, which we believe will validate our long range
hypothesis that by accessing these unculturable microorganisms
we will be able to gain access to an enormous source of novel
bioactive organic molecules. |